Albumentations on GitHub in Medical imaging
Used in 726 public GitHub repositories
Clinical and biomedical imaging used for diagnosis, treatment, anatomical analysis, and digital pathology.
Public examples
Top public GitHub repositories
Showing the top 100
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 148 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
47,184 stars3,130 forksOpenMMLab Semantic Segmentation Toolbox and Benchmark.
9,966 stars2,857 forksEasy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.
9,399 stars1,711 forksAI Toolkit for Healthcare Imaging
8,739 stars1,567 forksThe largest open-source medical AI skills library for OpenClawđŚ.
3,040 stars402 forksăICML 2025 Spotlightă Official Repo for Paper ââHealthGPT : A Medical Large Vision-Language Model for Unifying Comprehension and Generation via Heterogeneous Knowledge Adaptationââ
1,662 stars243 forksA lightweight adapter bridges SAM with medical imaging [MedIA]
1,326 stars127 forksMedRAX: Medical Reasoning Agent for Chest X-ray - ICML 2025
1,237 stars206 forksPyTorch implementation of UNet++ (Nested U-Net).
1,051 stars219 forksâď¸GenAI powered multi-agentic medical diagnostics and healthcare research assistance chatbot. đĽ Designed for healthcare professionals, researchers and patients.
981 stars207 forkstracking medical datasets, with a focus on medical imaging
930 stars120 forksA curated, multilingual library of 182 installable AI agent skills for end-to-end academic researchâspanning literature discovery, scientific writing, grant development, bioinformatics, drug discovery, clinical research, machine learning, and data analysis.
930 stars61 forksNeuroimaging analysis and visualization suite
877 stars301 forksZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
648 stars143 forksWining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge
638 stars212 forksDeep Learning Simplified is an Open-source repository, containing beginner to advance level deep learning projects for the contributors, who are willing to start their journey in Deep Learning. Devfolio URL, https://devfolio.co/projects/deep-learning-simplified-f013
599 stars472 forksSegMamba: Long-range Sequential Modeling Mamba For 3D Medical Image Segmentation
578 stars49 forksOfficial Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network", MICCAI 2022
571 stars85 forksImage augmentation for computer vision. AGPL-3.0-only or commercial licensing.
563 stars44 forks[AAAI' 25] U-KAN Makes Strong Backbone for Medical Image Segmentation and Generation
559 stars69 forksComputational Pathology Toolbox developed by TIA Centre, University of Warwick.
552 stars106 forks[BIONLP@ACL 2024] XrayGPT: Chest Radiographs Summarization using Medical Vision-Language Models.
532 stars63 forksKnowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the đĽPyTorch ecosystem. â Star to support our work!
488 stars74 forkscuCIM - RAPIDS GPU-accelerated image processing library
469 stars84 forksTools for computational pathology
463 stars87 forksGigaTIME: Multimodal AI generates virtual population for tumor microenvironment modeling (Cell)
411 stars104 forksCellViT: Vision Transformers for Precise Cell Segmentation and Classification
399 stars73 forks[IEEE Transactions on Medical Imaging/TMI 2023] This repo is the official implementation of "LViT: Language meets Vision Transformer in Medical Image Segmentation"
392 stars39 forksOfficial repository of CVPR 2024 paper "EMCAD: Efficient Multi-scale Convolutional Attention Decoding for Medical Image Segmentation"
354 stars24 forksAccessible and interoperable whole slide image analysis
326 stars32 forks3D Slicer Plugin for Segment anything in medical images
304 stars31 forksSegDINO: An Efficient Design for Medical and Natural Image Segmentation with DINO-V3
293 stars27 forksMedSeg: Medical Image Segmentation GUI Toolbox ĺŻč§ĺĺťĺŚĺžĺĺĺ˛ĺˇĽĺ ˇçŽą
289 stars22 forks[TPAMI 2026] Large-Scale 3D Medical Image Pre-training with Geometric Context Priors
288 stars18 forksThis repository is included artificial intelligence, machine learning, data science, computer vision projects related to healthcare.
274 stars76 forks[WACV 2024] Beyond Self-Attention: Deformable Large Kernel Attention for Medical Image Segmentation
269 stars22 forksGLoRIA: A Multimodal Global-Local Representation Learning Framework forLabel-efficient Medical Image Recognition
249 stars39 forks#38
owkin/FLamby
Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.
244 stars31 forksOfficial implementation of DoubleU-Net for Semantic Image Segmentation in TensorFlow & Pytorch (Nominated for Best Paper Award (IEEE CBMS))
241 stars70 forksML-Crate stands as the ultimate hub for a multitude of exciting ML projects, serving as the go-to resource haven for passionate and dedicated ML enthusiasts!đđŤ Devfolio URL, https://devfolio.co/projects/mlcrate-98f9
221 stars209 forks- 221 stars17 forks
[ICCV2023] XNet: Wavelet-Based Low and High Frequency Merging Networks for Semi- and Supervised Semantic Segmentation of Biomedical Images
217 stars10 forks#43
ttanida/rgrg
Code for the CVPR paper "Interactive and Explainable Region-guided Radiology Report Generation"
216 stars29 forksThis repo holds the code of TransFuse: Fusing Transformers and CNNs for Medical Image Segmentation
215 stars32 forksAccepted in CVPR 2023
215 stars16 forks- 213 stars51 forks
medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis
206 stars23 forks[NeurIPS 2026] U-Bench: A Comprehensive Understanding of U-Net through 100-Variant Benchmarking
202 stars26 forksA curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
193 stars34 forksA generalizable application framework for segmentation, regression, and classification using PyTorch
191 stars90 forks[WACV 2024] Adaptive Latent Diffusion Model for 3D Medical Image to Image Translation: Multi-modal Magnetic Resonance Imaging Study
189 stars21 forksThe official code for MedKLIP: Medical Knowledge Enhanced Language-Image Pre-Training in Radiology. We propose to leverage medical specific knowledge enhancing language-image pre-training method, significantly advancing the ability of pre-trained models to handle unseen diseases on zero-shot classification and grounding tasks.
183 stars20 forks[NeurIPS'22] Multi-Granularity Cross-modal Alignment for Generalized Medical Visual Representation Learning
182 stars28 forksIsaac for Healthcare reference workflows
177 stars46 forksImplementation of the AAAI-2025 paper "ConDSeg: A General Medical Image Segmentation Framework via Contrast-Driven Feature Enhancement".
173 stars15 forksClassify Skin cancer from the skin lesion images using Image classification. The dataset for the project is obtained from the Kaggle SIIM-ISIC-Melanoma-Classification competition.
172 stars55 forks[Nature Medicine'25] A Multimodal Vision Foundation Model for Clinical Dermatology
172 stars20 forksOffical Code of MICCAI'24 early accepted paper "LGRNet: Local-Global Reciprocal Network for Uterine Fibroid Segmentation in Ultrasound Videos"
172 stars17 forksA PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
171 stars29 forks(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
158 stars36 forksEndora: Video Generation Models as Endoscopy Simulators (MICCAI 2024)
149 stars7 forks[MICCAI'24 Provisional Acceptance] Official implementation of "BGF-YOLO: Enhanced YOLOv8 with Multiscale Attentional Feature Fusion for Brain Tumor Detection".
148 stars18 forks- 144 stars24 forks
PriMIA: Privacy-preserving Medical Image Analysis
139 stars22 forks- 138 stars6 forks
[ICONIP 2024] [IEEE Access 2025] YOLOv8-AM: YOLOv8 with Attention Mechanisms for Pediatric Wrist Fracture Detection
136 stars29 forks[ISBI 2024 Oral] Official Pytorch Code base for "CMUNeXt: An Efficient Medical Image Segmentation Network based on Large Kernel and Skip Fusion"
136 stars14 forksA Pytorch implement of medical image segmentation U-shape architecture benchmarks
135 stars8 forksDeep learning for medical image segmentation in R: 2D and 3D, DICOM and NIfTI, one specification.
134 stars9 forks[MICCAI 2021] Boundary-aware Transformers for Skin Lesion Segmentation
133 stars24 forks- 131 stars32 forks
Using DUCK-Net for polyp image segmentation. ( Nature Scientific Reports 2023 )
129 stars32 forksAn implementation of Unet for pytorch designed for digital pathology segmentation
128 stars68 forksOfficial implementation of ResUNet++, CRF, and TTA for segmentation of medical images (IEEE JBIHI)
126 stars27 forksR interface to fast.ai
121 stars13 forksVisual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
120 stars7 forksA package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
119 stars31 forksDaily updated resources on AI across various domains including ML, development, education, healthcare, real estate, robotics, crypto, web3 and more, curated by enthusiasts.
119 stars23 forks[IMAVIS] Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
118 stars9 forks[MICCAI 2024] Codebase for "Stable Diffusion Segmentation for Biomedical Images with Single-step Reverse Process"
117 stars10 forksNeurIPS 2023: Towards Generic Semi-Supervised Framework for Volumetric Medical Image Segmentation
116 stars5 forksEncoder-Decoder Cell and Nuclei segmentation models
108 stars6 forksCode for TIP2026 paper: CycleDiff: Cycle Diffusion Models for Unpaired Image-to-image Translation
104 stars4 forks[MICCAI'23] Official implementation of "RCS-YOLO: A Fast and High-Accuracy Object Detector for Brain Tumor Detection".
101 stars15 forksePillID Dataset: A Low-Shot Fine-Grained Benchmark for Pill Identification (CVPR 2020 VL3)
98 stars17 forksA working portfolio of end-to-end data engineering, actuarial modelling, and applied ML projects across the insurance and healthcare domains â from cloud lakehouse pipelines to regulatory-grade longevity models.
97 stars96 forksThe official implementation of "Delving into Masked Autoencoders for Multi-Label Thorax Disease Classification"
97 stars19 forksThis repo is the official implementation of 'Narrowing the semantic gaps in U-Net with learnable skip connections: The case of medical image segmentation' which is an improved journal version of UCTransNet.
97 stars14 forksOfficial repository of ICCV 2025 CVAMD Oral paper: MK-UNet: Multi-kernel Lightweight CNN for Medical Image Segmentation
96 stars11 forksUnsupervised Anomaly Detection in Medical Images Using Masked Diffusion Model
96 stars7 forks[JAMA] "Complete AI-Enabled Echocardiography Interpretation with Multitask Deep Learning" by Gregory Holste, Evangelos K. Oikonomou, MĂĄrton Tokodi, Attila KovĂĄcs, Zhangyang Wang, & Rohan Khera
95 stars27 forks[CIBM' 23]: A deeper and more compact split-attention U-Net for medical image segmentation
95 stars17 forksOpen-source multimodal dataset: 98K+ clinical cases & 139K+ medical images from PubMed Central
94 stars16 forksAn open-source digital pathology based rapid image annotation tool
93 stars26 forksA 3D bounding box detection model for medical data.
93 stars21 forks[ISBI 2023] Official Pytorch implementation of "CMU-Net: A Strong ConvMixer-based Medical Ultrasound Image Segmentation Network"
92 stars6 forksMulti-Aspect Vision Language Pretraining - CVPR2024
92 stars6 forks[MICCAI 2023] DermoSegDiff: A Boundary-aware Segmentation Diffusion Model for Skin Lesion Delineation
89 stars17 forks[CVPR 2025] Noise-Consistent Siamese-Diffusion for Medical Image Synthesis and Segmentation
89 stars7 forksLoss Functions in the Era of Semantic Segmentation: A Survey and Outlook
88 stars11 forks