Albumentations on GitHub in Life sciences
Used in 1,021 public GitHub repositories
Biological research, biotechnology, pharmaceutical research, biomedical science, and healthcare imaging.
Public examples
Top public GitHub repositories
Showing the top 100
The fastai deep learning library
28,011 stars7,653 forksTurn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 148 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
26,687 stars3,130 forksOpenMMLab Semantic Segmentation Toolbox and Benchmark.
9,832 stars2,852 forksEasy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.
9,343 stars1,710 forksAI Toolkit for Healthcare Imaging
8,273 stars1,567 forksDemocratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
6,761 stars2,263 forksA comprehensive list of Deep Learning / Artificial Intelligence and Machine Learning tutorials - rapidly expanding into areas of AI/Deep Learning / Machine Vision / NLP and industry specific areas such as Climate / Energy, Automotives, Retail, Pharma, Medicine, Healthcare, Policy, Ethics and more.
3,992 stars1,636 forksThe largest open-source medical AI skills library for OpenClawđŚ.
2,575 stars402 forksăICML 2025 Spotlightă Official Repo for Paper ââHealthGPT : A Medical Large Vision-Language Model for Unifying Comprehension and Generation via Heterogeneous Knowledge Adaptationââ
1,624 stars240 forksMLE-bench is a benchmark for measuring how well AI agents perform at machine learning engineering
1,550 stars257 forksAll-in-one training for vision models (YOLO, ViTs, RT-DETR, DINOv3): pretraining, fine-tuning, distillation.
1,476 stars91 forksA lightweight adapter bridges SAM with medical imaging [MedIA]
1,313 stars126 forksMedRAX: Medical Reasoning Agent for Chest X-ray - ICML 2025
1,176 stars202 forkstracking medical datasets, with a focus on medical imaging
923 stars120 forksâď¸GenAI powered multi-agentic medical diagnostics and healthcare research assistance chatbot. đĽ Designed for healthcare professionals, researchers and patients.
894 stars207 forksZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
648 stars143 forksWining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge
639 stars212 forksDeep Learning Simplified is an Open-source repository, containing beginner to advance level deep learning projects for the contributors, who are willing to start their journey in Deep Learning. Devfolio URL, https://devfolio.co/projects/deep-learning-simplified-f013
582 stars473 forksSegMamba: Long-range Sequential Modeling Mamba For 3D Medical Image Segmentation
566 stars49 forksOfficial Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network", MICCAI 2022
564 stars86 forks[AAAI' 25] U-KAN Makes Strong Backbone for Medical Image Segmentation and Generation
540 stars70 forks[BIONLP@ACL 2024] XrayGPT: Chest Radiographs Summarization using Medical Vision-Language Models.
533 stars63 forksComputational Pathology Toolbox developed by TIA Centre, University of Warwick.
531 stars106 forksThis project is dedicated to the implementation and research of Kolmogorov-Arnold convolutional networks. The repository includes implementations of 1D, 2D, and 3D convolutions with different kernels, ResNet-like and DenseNet-like models, training code based on accelerate/PyTorch, as well as scripts for experiments with CIFAR-10 and Tiny ImageNet.
531 stars44 forksKnowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the đĽPyTorch ecosystem. â Star to support our work!
483 stars74 forksNext-generation Albumentations: dual-licensed for open-source and commercial use
466 stars31 forkscuCIM - RAPIDS GPU-accelerated image processing library
461 stars84 forksđ ćşĺ¨ĺŚäš ä¸ćˇąĺşŚĺŚäš ĺŽććç¨ | Comprehensive ML & DL Tutorial with Jupyter Notebooks | ĺ ĺŤçşżć§ĺĺ˝ăçĽçťç˝çťăCNNăRNNçĺŽć´ćç¨
453 stars64 forksTools for computational pathology
452 stars87 forksImplementation of our AAAI'22 work: 'UCTransNet: Rethinking the Skip Connections in U-Net from a Channel-wise Perspective with Transformer'.
436 stars54 forksLoongFlow is an expert-grade Agent framework for Loop Engineering. Through a Plan-Execute-Summary loop and structured experiential memory, it enables AI to continuously think, execute, reflect, and evolve across complex software engineering, mathematical, and machine learning tasks.
429 stars53 forks- 425 stars108 forks
The official implementation of "ML-Master: Towards AI-for-AI via Integration of Exploration and Reasoning"
421 stars57 forks[IEEE Transactions on Medical Imaging/TMI 2023] This repo is the official implementation of "LViT: Language meets Vision Transformer in Medical Image Segmentation"
388 stars40 forksCellViT: Vision Transformers for Precise Cell Segmentation and Classification
383 stars74 forksGigaTIME: Multimodal AI generates virtual population for tumor microenvironment modeling (Cell)
370 stars100 forks- 345 stars34 forks
Official repository of CVPR 2024 paper "EMCAD: Efficient Multi-scale Convolutional Attention Decoding for Medical Image Segmentation"
341 stars24 forks#39
VIAME/VIAME
Video and Image Analytics for Multiple Environments
335 stars89 forksThis is the official Pytorch implementation of the paper "Diffusion Models for Implicit Image Segmentation Ensembles".
317 stars45 forksU-shape Transformer for Underwater Image Enhancement
305 stars31 forksThe Infosys Responsible AI toolkit incorporates various features including safety, security, explainability, fairness, bias and hallucination detection to ensure AI solutions are trustworthy and transparent.
297 stars74 forks- 295 stars33 forks
Accessible and interoperable whole slide image analysis
295 stars30 forks3D Slicer Plugin for Segment anything in medical images
294 stars31 forksMLEvolve is an open-source autonomous system for end-to-end machine learning algorithm design and optimization powered by progressive search and experience-driven memory.
293 stars54 forksMedSeg: Medical Image Segmentation GUI Toolbox ĺŻč§ĺĺťĺŚĺžĺĺĺ˛ĺˇĽĺ ˇçŽą
287 stars23 forksThis repository contains an exhaustive coverage of a hands on approach to PyTorch along side powerful tools to accelerate model tuning and training
274 stars57 forks[WACV 2024] Beyond Self-Attention: Deformable Large Kernel Attention for Medical Image Segmentation
267 stars22 forksSegDINO: An Efficient Design for Medical and Natural Image Segmentation with DINO-V3
266 stars27 forks[TPAMI 2026] Large-Scale 3D Medical Image Pre-training with Geometric Context Priors
265 stars17 forksA toolkit to learn how to model and interpret regulatory sequence data using deep learning.
264 stars66 forksThis repository is included artificial intelligence, machine learning, data science, computer vision projects related to healthcare.
257 stars75 forks[WACV23] A strong baseline for body part-based person re-identification
254 stars22 forksOfficial implementation of DoubleU-Net for Semantic Image Segmentation in TensorFlow & Pytorch (Nominated for Best Paper Award (IEEE CBMS))
241 stars70 forksGLoRIA: A Multimodal Global-Local Representation Learning Framework forLabel-efficient Medical Image Recognition
240 stars39 forks#57
owkin/FLamby
Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.
238 stars31 forksThis repository contains code to train a self-supervised learning model on chest X-ray images that lack explicit annotations and evaluate this model's performance on pathology-classification tasks.
229 stars51 forks- 218 stars17 forks
ML-Crate stands as the ultimate hub for a multitude of exciting ML projects, serving as the go-to resource haven for passionate and dedicated ML enthusiasts!đđŤ Devfolio URL, https://devfolio.co/projects/mlcrate-98f9
215 stars210 forksThis repo holds the code of TransFuse: Fusing Transformers and CNNs for Medical Image Segmentation
215 stars33 forksAccepted in CVPR 2023
214 stars16 forks[ICCV2023] XNet: Wavelet-Based Low and High Frequency Merging Networks for Semi- and Supervised Semantic Segmentation of Biomedical Images
214 stars10 forks- 213 stars51 forks
#65
ttanida/rgrg
Code for the CVPR paper "Interactive and Explainable Region-guided Radiology Report Generation"
212 stars30 forks[ECCV24] Keypoint Promptable Re-Identification: SOTA ReID method robust to occlusions and multi-person ambiguity
210 stars27 forks- 205 stars53 forks
medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis
199 stars23 forksPyVerse is an open-source collection of diverse Python projects, tools, and scripts, ranging from beginner to advanced, across various domains like machine learning, web development, and automation.
197 stars319 forksA generalizable application framework for segmentation, regression, and classification using PyTorch
191 stars90 forksAdaptive Latent Diffusion Model for 3D Medical Image
188 stars21 forksEvoMaster: A Foundational Evolving Agent Framework for Agentic Science at Scale.
184 stars33 forksU-Bench: A Comprehensive Understanding of U-Net through 100-Variant Benchmarking
184 stars24 forks[NeurIPS'22] Multi-Granularity Cross-modal Alignment for Generalized Medical Visual Representation Learning
180 stars25 forksThe official code for MedKLIP: Medical Knowledge Enhanced Language-Image Pre-Training in Radiology. We propose to leverage medical specific knowledge enhancing language-image pre-training method, significantly advancing the ability of pre-trained models to handle unseen diseases on zero-shot classification and grounding tasks.
180 stars20 forks1st place solution for SIIM-FISABIO-RSNA COVID-19 Detection Challenge
173 stars57 forksClassify Skin cancer from the skin lesion images using Image classification. The dataset for the project is obtained from the Kaggle SIIM-ISIC-Melanoma-Classification competition.
172 stars55 forksA PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
171 stars29 forksOffical Code of MICCAI'24 early accepted paper "LGRNet: Local-Global Reciprocal Network for Uterine Fibroid Segmentation in Ultrasound Videos"
171 stars17 forks- 167 stars77 forks
[Nature Medicine'25] A Multimodal Vision Foundation Model for Clinical Dermatology
160 stars19 forks(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
158 stars36 forksImplementation of the AAAI-2025 paper "ConDSeg: A General Medical Image Segmentation Framework via Contrast-Driven Feature Enhancement".
157 stars16 forks- 151 stars50 forks
Endora: Video Generation Models as Endoscopy Simulators (MICCAI 2024)
151 stars7 forksScalable Instance Segmentation using PyTorch & PyTorch Lightning.
150 stars23 forks- 150 stars8 forks
[MICCAI'24 Provisional Acceptance] Official implementation of "BGF-YOLO: Enhanced YOLOv8 with Multiscale Attentional Feature Fusion for Brain Tumor Detection".
147 stars18 forks- 143 stars24 forks
PriMIA: Privacy-preserving Medical Image Analysis
138 stars22 forks[ICONIP 2024] [IEEE Access 2025] YOLOv8-AM: YOLOv8 with Attention Mechanisms for Pediatric Wrist Fracture Detection
134 stars29 forksNotebooks demonstrating example applications of the cleanlab library
134 stars28 forks[MICCAI 2021] Boundary-aware Transformers for Skin Lesion Segmentation
133 stars24 forks- 133 stars6 forks
The Vesuvius Challenge monorepo
132 stars97 forksA Pytorch implement of medical image segmentation U-shape architecture benchmarks
129 stars8 forksUsing DUCK-Net for polyp image segmentation. ( Nature Scientific Reports 2023 )
128 stars31 forksAn implementation of Unet for pytorch designed for digital pathology segmentation
127 stars67 forksMastering NLP from Foundations to LLMs, Published by Packt
127 stars62 forks[ISBI 2024 Oral] Official Pytorch Code base for "CMUNeXt: An Efficient Medical Image Segmentation Network based on Large Kernel and Skip Fusion"
127 stars14 forks